docking software openeye fred Search Results


fred docking software  (OpenEye Scientific Software Inc)
90
OpenEye Scientific Software Inc fred docking software
Fred Docking Software, supplied by OpenEye Scientific Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/fred docking software/product/OpenEye Scientific Software Inc
Average 90 stars, based on 1 article reviews
fred docking software - by Bioz Stars, 2026-03
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fred docking program  (OpenEye Scientific Software Inc)
90
OpenEye Scientific Software Inc fred docking program
Fred Docking Program, supplied by OpenEye Scientific Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/fred docking program/product/OpenEye Scientific Software Inc
Average 90 stars, based on 1 article reviews
fred docking program - by Bioz Stars, 2026-03
90/100 stars
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fast rigid exhaustive docking (fred) receptor, version 2.2.5  (OpenEye Scientific Software Inc)
90
OpenEye Scientific Software Inc fast rigid exhaustive docking (fred) receptor, version 2.2.5
Fast Rigid Exhaustive Docking (Fred) Receptor, Version 2.2.5, supplied by OpenEye Scientific Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/fast rigid exhaustive docking (fred) receptor, version 2.2.5/product/OpenEye Scientific Software Inc
Average 90 stars, based on 1 article reviews
fast rigid exhaustive docking (fred) receptor, version 2.2.5 - by Bioz Stars, 2026-03
90/100 stars
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hybrid docking module oedocking 3.2.0.2  (OpenEye Scientific Software Inc)
90
OpenEye Scientific Software Inc hybrid docking module oedocking 3.2.0.2
Hybrid Docking Module Oedocking 3.2.0.2, supplied by OpenEye Scientific Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/hybrid docking module oedocking 3.2.0.2/product/OpenEye Scientific Software Inc
Average 90 stars, based on 1 article reviews
hybrid docking module oedocking 3.2.0.2 - by Bioz Stars, 2026-03
90/100 stars
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molecular docking openeye fred docking software  (OpenEye Scientific Software Inc)
90
OpenEye Scientific Software Inc molecular docking openeye fred docking software
CID 1067700 docked in the nucleotide binding site of Rab7 in the (a–b) GDP-bound (PDB 1VG9) and (c–d) (GNP)- bound (PDB 1VG8) conformations. <t>Molecular</t> <t>docking</t> carried out using <t>Fred</t> docking <t>software.</t> Both GTP or GDP and CID 1067700 are shown simultaneously docked in the pocket for purposes of comparing their orientations in the pocket. Interaction maps for (e–f) Rab7-GDP vs. CID 1067700 and (g–h) Rab7-GNP vs. CID 1067700 illustrate differences in number and sites of interaction.
Molecular Docking Openeye Fred Docking Software, supplied by OpenEye Scientific Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/molecular docking openeye fred docking software/product/OpenEye Scientific Software Inc
Average 90 stars, based on 1 article reviews
molecular docking openeye fred docking software - by Bioz Stars, 2026-03
90/100 stars
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fred 36 docking  (OpenEye Scientific Software Inc)
90
OpenEye Scientific Software Inc fred 36 docking
CID 1067700 docked in the nucleotide binding site of Rab7 in the (a–b) GDP-bound (PDB 1VG9) and (c–d) (GNP)- bound (PDB 1VG8) conformations. <t>Molecular</t> <t>docking</t> carried out using <t>Fred</t> docking <t>software.</t> Both GTP or GDP and CID 1067700 are shown simultaneously docked in the pocket for purposes of comparing their orientations in the pocket. Interaction maps for (e–f) Rab7-GDP vs. CID 1067700 and (g–h) Rab7-GNP vs. CID 1067700 illustrate differences in number and sites of interaction.
Fred 36 Docking, supplied by OpenEye Scientific Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/fred 36 docking/product/OpenEye Scientific Software Inc
Average 90 stars, based on 1 article reviews
fred 36 docking - by Bioz Stars, 2026-03
90/100 stars
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docking pose of myricetin docked by fred  (OpenEye Scientific Software Inc)
90
OpenEye Scientific Software Inc docking pose of myricetin docked by fred
CID 1067700 docked in the nucleotide binding site of Rab7 in the (a–b) GDP-bound (PDB 1VG9) and (c–d) (GNP)- bound (PDB 1VG8) conformations. <t>Molecular</t> <t>docking</t> carried out using <t>Fred</t> docking <t>software.</t> Both GTP or GDP and CID 1067700 are shown simultaneously docked in the pocket for purposes of comparing their orientations in the pocket. Interaction maps for (e–f) Rab7-GDP vs. CID 1067700 and (g–h) Rab7-GNP vs. CID 1067700 illustrate differences in number and sites of interaction.
Docking Pose Of Myricetin Docked By Fred, supplied by OpenEye Scientific Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/docking pose of myricetin docked by fred/product/OpenEye Scientific Software Inc
Average 90 stars, based on 1 article reviews
docking pose of myricetin docked by fred - by Bioz Stars, 2026-03
90/100 stars
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docking software openeye hybrid (sdf)  (OpenEye Scientific Software Inc)
90
OpenEye Scientific Software Inc docking software openeye hybrid (sdf)
CID 1067700 docked in the nucleotide binding site of Rab7 in the (a–b) GDP-bound (PDB 1VG9) and (c–d) (GNP)- bound (PDB 1VG8) conformations. <t>Molecular</t> <t>docking</t> carried out using <t>Fred</t> docking <t>software.</t> Both GTP or GDP and CID 1067700 are shown simultaneously docked in the pocket for purposes of comparing their orientations in the pocket. Interaction maps for (e–f) Rab7-GDP vs. CID 1067700 and (g–h) Rab7-GNP vs. CID 1067700 illustrate differences in number and sites of interaction.
Docking Software Openeye Hybrid (Sdf), supplied by OpenEye Scientific Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/docking software openeye hybrid (sdf)/product/OpenEye Scientific Software Inc
Average 90 stars, based on 1 article reviews
docking software openeye hybrid (sdf) - by Bioz Stars, 2026-03
90/100 stars
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fast rigid exhaustive docking software fred version 2.2.5  (OpenEye Scientific Software Inc)
90
OpenEye Scientific Software Inc fast rigid exhaustive docking software fred version 2.2.5
CID 1067700 docked in the nucleotide binding site of Rab7 in the (a–b) GDP-bound (PDB 1VG9) and (c–d) (GNP)- bound (PDB 1VG8) conformations. <t>Molecular</t> <t>docking</t> carried out using <t>Fred</t> docking <t>software.</t> Both GTP or GDP and CID 1067700 are shown simultaneously docked in the pocket for purposes of comparing their orientations in the pocket. Interaction maps for (e–f) Rab7-GDP vs. CID 1067700 and (g–h) Rab7-GNP vs. CID 1067700 illustrate differences in number and sites of interaction.
Fast Rigid Exhaustive Docking Software Fred Version 2.2.5, supplied by OpenEye Scientific Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/fast rigid exhaustive docking software fred version 2.2.5/product/OpenEye Scientific Software Inc
Average 90 stars, based on 1 article reviews
fast rigid exhaustive docking software fred version 2.2.5 - by Bioz Stars, 2026-03
90/100 stars
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fred docking facility  (OpenEye Scientific Software Inc)
90
OpenEye Scientific Software Inc fred docking facility
CID 1067700 docked in the nucleotide binding site of Rab7 in the (a–b) GDP-bound (PDB 1VG9) and (c–d) (GNP)- bound (PDB 1VG8) conformations. <t>Molecular</t> <t>docking</t> carried out using <t>Fred</t> docking <t>software.</t> Both GTP or GDP and CID 1067700 are shown simultaneously docked in the pocket for purposes of comparing their orientations in the pocket. Interaction maps for (e–f) Rab7-GDP vs. CID 1067700 and (g–h) Rab7-GNP vs. CID 1067700 illustrate differences in number and sites of interaction.
Fred Docking Facility, supplied by OpenEye Scientific Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/fred docking facility/product/OpenEye Scientific Software Inc
Average 90 stars, based on 1 article reviews
fred docking facility - by Bioz Stars, 2026-03
90/100 stars
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fred hybrid docking mode  (OpenEye Scientific Software Inc)
90
OpenEye Scientific Software Inc fred hybrid docking mode
CID 1067700 docked in the nucleotide binding site of Rab7 in the (a–b) GDP-bound (PDB 1VG9) and (c–d) (GNP)- bound (PDB 1VG8) conformations. <t>Molecular</t> <t>docking</t> carried out using <t>Fred</t> docking <t>software.</t> Both GTP or GDP and CID 1067700 are shown simultaneously docked in the pocket for purposes of comparing their orientations in the pocket. Interaction maps for (e–f) Rab7-GDP vs. CID 1067700 and (g–h) Rab7-GNP vs. CID 1067700 illustrate differences in number and sites of interaction.
Fred Hybrid Docking Mode, supplied by OpenEye Scientific Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/fred hybrid docking mode/product/OpenEye Scientific Software Inc
Average 90 stars, based on 1 article reviews
fred hybrid docking mode - by Bioz Stars, 2026-03
90/100 stars
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fred docking calculations  (OpenEye Scientific Software Inc)
90
OpenEye Scientific Software Inc fred docking calculations
CID 1067700 docked in the nucleotide binding site of Rab7 in the (a–b) GDP-bound (PDB 1VG9) and (c–d) (GNP)- bound (PDB 1VG8) conformations. <t>Molecular</t> <t>docking</t> carried out using <t>Fred</t> docking <t>software.</t> Both GTP or GDP and CID 1067700 are shown simultaneously docked in the pocket for purposes of comparing their orientations in the pocket. Interaction maps for (e–f) Rab7-GDP vs. CID 1067700 and (g–h) Rab7-GNP vs. CID 1067700 illustrate differences in number and sites of interaction.
Fred Docking Calculations, supplied by OpenEye Scientific Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/fred docking calculations/product/OpenEye Scientific Software Inc
Average 90 stars, based on 1 article reviews
fred docking calculations - by Bioz Stars, 2026-03
90/100 stars
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Image Search Results


CID 1067700 docked in the nucleotide binding site of Rab7 in the (a–b) GDP-bound (PDB 1VG9) and (c–d) (GNP)- bound (PDB 1VG8) conformations. Molecular docking carried out using Fred docking software. Both GTP or GDP and CID 1067700 are shown simultaneously docked in the pocket for purposes of comparing their orientations in the pocket. Interaction maps for (e–f) Rab7-GDP vs. CID 1067700 and (g–h) Rab7-GNP vs. CID 1067700 illustrate differences in number and sites of interaction.

Journal: ACS chemical biology

Article Title: A Competitive Nucleotide Binding Inhibitor: In vitro Characterization of Rab7 GTPase Inhibition

doi: 10.1021/cb3001099

Figure Lengend Snippet: CID 1067700 docked in the nucleotide binding site of Rab7 in the (a–b) GDP-bound (PDB 1VG9) and (c–d) (GNP)- bound (PDB 1VG8) conformations. Molecular docking carried out using Fred docking software. Both GTP or GDP and CID 1067700 are shown simultaneously docked in the pocket for purposes of comparing their orientations in the pocket. Interaction maps for (e–f) Rab7-GDP vs. CID 1067700 and (g–h) Rab7-GNP vs. CID 1067700 illustrate differences in number and sites of interaction.

Article Snippet: The molecular docking of CID 1067700 to the nucleotide binding site of Rab7 as predicted by the experimental data was examined using molecular docking OpenEye Fred docking software ( ).

Techniques: Binding Assay, Software